SeqTec: NGS Bioinformatics Toolkit
===================================

Runnable code examples for every bioinformatics tool covered in
*The Complete Guide to Next-Generation Sequencing*.

.. note::

   This project was developed by Kevin Korfmann as an educational resource
   for next-generation sequencing and bioinformatics. Drafting, code examples,
   and explanations were produced with substantial assistance from Claude, an
   AI assistant by Anthropic. All content has been reviewed and curated by the
   author, but readers should verify implementations against primary literature.

.. toctree::
   :maxdepth: 2
   :caption: Getting Started

   getting-started/index

.. toctree::
   :maxdepth: 2
   :caption: Data Formats

   data-formats/index

.. toctree::
   :maxdepth: 2
   :caption: Tools

   tools/index

.. toctree::
   :maxdepth: 2
   :caption: Workflows

   workflows/index

.. toctree::
   :maxdepth: 2
   :caption: Infrastructure

   infrastructure/index

.. toctree::
   :maxdepth: 1
   :caption: Reference

   glossary