Workflows
=========

End-to-end analysis workflows with Snakemake and Nextflow implementations.

.. toctree::
   :maxdepth: 1

   snakemake
   nextflow
   wgs-variant-calling
   rnaseq-differential-expression
   atacseq
   chipseq
   scrna-seq
   bisulfite-seq
   16s-amplicon
   bacterial-genome-assembly
   metagenomics-classification
   nanopore-variant-calling