Workflows

End-to-end analysis workflows with Snakemake and Nextflow implementations.

• Snakemake
• Nextflow
• WGS Variant Calling
• RNA-seq Differential Expression
• ATAC-seq
• ChIP-seq
• scRNA-seq
• Bisulfite Sequencing (WGBS)
• 16S Amplicon Sequencing
• Bacterial Genome Assembly (Nanopore)
• Metagenomic Classification
• Nanopore Variant Calling